1000 Genomes Low Coverage Sequencing - SRA

SRX116963: 1000 Genomes Low Coverage Sequencing
8 ILLUMINA (Illumina HiSeq 2000) runs: 29M spots, 5.9G bases, 2.6Gb downloads

Design: Low Pass Illumina Whole Genome sequencing

Submitted by: Broad Institute (BI)

Study: Whole genome sequencing of (KHV) Kinh in Ho Chi minh City, Vietnam HapMap population

PRJNA42575 • SRP001516 • All experiments • All runs

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<P> The purpose of the project is to support the discovery and understanding of genetic variants that influence human disease. DNA for the KHV Kinh in Ho Chi minh City, Vietnam. DNA for sequencing was extracted from lymphoblastoid cell line.

Sample: Coriell HG01869

SAMN00249843 • SRS179168 • All experiments • All runs

Organism: Homo sapiens

Library:

Name: Sage-68947

Instrument: Illumina HiSeq 2000

Strategy: WGS

Source: GENOMIC

Selection: RANDOM

Layout: PAIRED

Spot descriptor:

1 forward102 reverse

Experiment attributes: (show all 4 attributes...) (hide...)

4 BI attributes: (show...)(hide...)

BI GSSR sample ID: 120583.0 
BI GSSR sample LSID: broadinstitute.org:bsp.prod.sample:25MUC 
BI project name: G14519 
BI work request ID: 26160 

Pipeline: show...hide...

Name	Step	Program	Version
base caller	2012-01-22 02:04:36.0	GAPipeline	RTA1.12.4.2

Runs: 8 runs, 29M spots, 5.9G bases, 2.6Gb

Run	# of Spots	# of Bases	Size	Published
SRR401206	3,569,392	721M	322.1Mb	2012-01-23
SRR401208	3,599,743	727.1M	326.3Mb	2012-01-23
SRR401238	3,594,838	726.2M	324.9Mb	2012-01-23
SRR402607	3,641,680	735.6M	330.5Mb	2012-01-25
SRR402613	3,730,777	753.6M	338.7Mb	2012-01-25
SRR402617	3,608,795	729M	325.7Mb	2012-01-25
SRR402641	3,656,067	738.5M	331.1Mb	2012-01-25
SRR402670	3,632,657	733.8M	326.9Mb	2012-01-25

ID:: 134789

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